In my situation, the GFX 100S shutter shock issue is mostly due to the fact that it's on an F-Universalis. I turned on electronic shutter (ES) and haven't taken it off ES since. Given the kind of photography I'm doing with this outfit, I'm not seeing any issues (e.g., rolling shutter).
I expect shutter shock with a GFX 100S could happen on other digital view camera setups. You're attaching the GFX 100S to a device that is then attached to a tripod. There are lots of points for vibration. Keep in mind too that there's some shutter shock with certain long native GF lenses at specific shutter speeds. This is not uncommon; other cameras have shutter shock problems too under certain conditions.
Any time you're flat stitching, you're increasing the field of view. What you get depends on what you're trying to do. Panoramas are an obvious example of a much increased field of view. Some people want to keep the native aspect ratio, e.g., they shoot 4:3 and want a 4:3 image with a larger field of view. As a rough guide, if you flat stitch in portrait orientation with left and right shifts of 12.75mm on a 33mm x 44mm sensor, you will create a 4:3 aspect ratio image (same as native) with 0.75x the focal length. As an example, if you do this with a 50mm lens, you'll get a 4:3 image with the angle of view of a 37.5mm lens (but of course it's still a 50mm lens, so you get all the characteristics of a 50mm lens, including depth of field).
My Pentax-A 645 35/3.5 is a terrific little lens with an image circle that should just barely allow 12.75mm shifts for flat stitching to the original aspect ratio. However, I don't bother because it doesn't work well. The 645 image circle is technically around 69mm, so the 73mm needed for 12.75mm shifts is pushing it hard. At the edges the image quality isn't great. This is where John's RZ lenses, with their image circles designed for 6x7, do much better.
The other issue with trying to flat stitch to 4:3 with a lens like the Pentax-A 645 35/3.5 is you're fighting the distortion profile. A 33mm x 44mm frame in the centre of the Pentax-A 645 35/3.5 image circle is mostly barrel distortion; the moustache distortion is just starting at the very edges. However, if you left/right shift 12.75mm, you're getting the full moustache.
So for me, the bottom line is that if I need wider than 35mm, I'll try with my Leica PC Super-Angulon 28/2.8 rather than flat stitching the Pentax-A 645 35/3.5. I always get better, more reliable results even with its limitation.